MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.2626614604208946
cnr4.783981375766009
efc0.5821359120539734
fber90.80362701416016
fwhmavg3.8909133333333337
fwhmx3.77575
fwhmy4.06729
fwhmz3.8297
icvscsf0.18192298666597986
icvsgm0.4792295424241125
icvswm0.3388474709099077
inumed0.7871705293655396
inurange0.2722490668296813
qi10.0
qi20.0030420990787388014
rpvecsf29.172336041577907
rpvegm12.961432414818775
rpvewm20.70868239459263
sizex180
sizey256
sizez256
snrcsf2.613199675972301
snrgm10.238832462968428
snrtotal11.367301899571217
snrwm21.249873559772926
snrdcsf15.112629955019866
snrdgm28.532777739201755
snrdtotal29.778522052950517
snrdwm45.690158464629924
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk1.4732006308282921
summarybgmad14.33881950378418
summarybgmean51.29874038696289
summarybgmedian49.920799255371094
summarybgn2961983.0
summarybgp0529.78679542541504
summarybgp9577.58764572143554
summarybgstdv15.064249992370605
summarycsfk0.4362179202665568
summarycsfmad141.67605590820312
summarycsfmean330.2882080078125
summarycsfmedian330.76666259765625
summarycsfn9932.0
summarycsfp05141.74229049682617
summarycsfp95527.2203979492188
summarycsfstdv126.56897735595703
summarygmk0.4133771827443371
summarygmmad57.10760498046875
summarygmmean626.1941528320312
summarygmmedian624.4903564453125
summarygmn42049.0
summarygmp05528.50361328125
summarygmp95730.67978515625
summarygmstdv60.991615295410156
summarywmk1.1709067119601082
summarywmmad41.52693557739258
summarywmmean997.6858520507812
summarywmmedian1000.010009765625
summarywmn166166.0
summarywmp05915.6562805175781
summarywmp951069.228271484375
summarywmstdv47.05943298339844
tpmoverlapcsf0.21571293473243713
tpmoverlapgm0.5440045595169067
tpmoverlapwm0.5500717163085938
wm2max0.7261783932225984

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5sum3d428100d68e17dc2e30e8cdc5db774f
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.