MRIQC: individual T1w report

Summary

Subject ID: 033_ControlPre.
Date and time: 2018-05-06, 23:05.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.2626614604208946
cnr			4.783981375766009
efc			0.5821359120539734
fber			90.80362701416016
fwhm	avg		3.8909133333333337
fwhm	x		3.77575
fwhm	y		4.06729
fwhm	z		3.8297
icvs	csf		0.18192298666597986
icvs	gm		0.4792295424241125
icvs	wm		0.3388474709099077
inu	med		0.7871705293655396
inu	range		0.2722490668296813
qi	1		0.0
qi	2		0.0030420990787388014
rpve	csf		29.172336041577907
rpve	gm		12.961432414818775
rpve	wm		20.70868239459263
size	x		180
size	y		256
size	z		256
snr	csf		2.613199675972301
snr	gm		10.238832462968428
snr	total		11.367301899571217
snr	wm		21.249873559772926
snrd	csf		15.112629955019866
snrd	gm		28.532777739201755
snrd	total		29.778522052950517
snrd	wm		45.690158464629924
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	1.4732006308282921
summary	bg	mad	14.33881950378418
summary	bg	mean	51.29874038696289
summary	bg	median	49.920799255371094
summary	bg	n	2961983.0
summary	bg	p05	29.78679542541504
summary	bg	p95	77.58764572143554
summary	bg	stdv	15.064249992370605
summary	csf	k	0.4362179202665568
summary	csf	mad	141.67605590820312
summary	csf	mean	330.2882080078125
summary	csf	median	330.76666259765625
summary	csf	n	9932.0
summary	csf	p05	141.74229049682617
summary	csf	p95	527.2203979492188
summary	csf	stdv	126.56897735595703
summary	gm	k	0.4133771827443371
summary	gm	mad	57.10760498046875
summary	gm	mean	626.1941528320312
summary	gm	median	624.4903564453125
summary	gm	n	42049.0
summary	gm	p05	528.50361328125
summary	gm	p95	730.67978515625
summary	gm	stdv	60.991615295410156
summary	wm	k	1.1709067119601082
summary	wm	mad	41.52693557739258
summary	wm	mean	997.6858520507812
summary	wm	median	1000.010009765625
summary	wm	n	166166.0
summary	wm	p05	915.6562805175781
summary	wm	p95	1069.228271484375
summary	wm	stdv	47.05943298339844
tpm	overlap	csf	0.21571293473243713
tpm	overlap	gm	0.5440045595169067
tpm	overlap	wm	0.5500717163085938
wm2max			0.7261783932225984

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	3d428100d68e17dc2e30e8cdc5db774f
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.